Skip to main content

2024 | OriginalPaper | Buchkapitel

Microarray Data Classification and Gene Selection Using Convolutional Neural Network

verfasst von : M. Jansi Rani, M. Karuppasamy, K. Poorani

Erschienen in: ICT: Innovation and Computing

Verlag: Springer Nature Singapore

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Over the past years, there is a rapid expansion for handling bioinformatics data, particularly processing with gene expression levels via microarrays. Due to the characteristic of microarray data, which often entails with more features and less samples, the task of classifying this data becomes notably intricate. By using microarray technology, gene expression profiles may be produced in massive quantities. Currently, gene expression data are used to diagnose illness. The use of deep learning algorithms is one such method that aids in this process. These methods work well for classifying and identifying informative genes. The classes of testing samples may be predicted using these genes. Microarray data used to identify cancer often has a small number of samples and a large feature collection size derived from gene expression data. Use of deep learning algorithms is currently receiving a lot of interest in the field of artificial intelligence to address various problems. In this paper, we examined a deep learning system for microarray categorization based on the convolutional neural network (CNN) over other machine learning techniques. The effectiveness of CNN has been compared with existing system, and results are discussed.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
1.
Zurück zum Zitat Solorio Fernández S, Carrasco Ochoa JA, Martínez Trinidad JF (2020) A review of unsupervised feature selection methods. Artif Intell Rev 53(2):907–948CrossRef Solorio Fernández S, Carrasco Ochoa JA, Martínez Trinidad JF (2020) A review of unsupervised feature selection methods. Artif Intell Rev 53(2):907–948CrossRef
2.
Zurück zum Zitat García Díaz P et al (2020) Unsupervised feature selection algorithm for multiclass cancer classification of gene expression RNA Seq data. Genomics 112(2):1916–1925CrossRef García Díaz P et al (2020) Unsupervised feature selection algorithm for multiclass cancer classification of gene expression RNA Seq data. Genomics 112(2):1916–1925CrossRef
3.
Zurück zum Zitat Jansi Rani M, Devaraj D (2019) Two stage hybrid gene selection using mutual information and genetic algorithm for cancer data classification. J Med Syst 43(8):235–246 Jansi Rani M, Devaraj D (2019) Two stage hybrid gene selection using mutual information and genetic algorithm for cancer data classification. J Med Syst 43(8):235–246
4.
Zurück zum Zitat Garbin C, Zhu X, Marques O (2020) Drop-out vs. batch normalization: an empirical study of their impact to deep learning. Multimed Tools Appl 79(19):12777–12815CrossRef Garbin C, Zhu X, Marques O (2020) Drop-out vs. batch normalization: an empirical study of their impact to deep learning. Multimed Tools Appl 79(19):12777–12815CrossRef
5.
Zurück zum Zitat Jansi Rani M, Karuppasamy M (2022) Cloud computing-based parallel mutual information for gene selection and support vector machine classification for brain tumor microarray data. NeuroQuantology 20(6):6223–6233 Jansi Rani M, Karuppasamy M (2022) Cloud computing-based parallel mutual information for gene selection and support vector machine classification for brain tumor microarray data. NeuroQuantology 20(6):6223–6233
6.
Zurück zum Zitat Liao Q, Jiang L, Wang X, Zhang C, Ding Y (2017) Cancer classification with multi-task deep learning Liao Q, Jiang L, Wang X, Zhang C, Ding Y (2017) Cancer classification with multi-task deep learning
7.
Zurück zum Zitat Lee CP, Lin WS, Chen YM, Kuo B (2011) Gene selection and sample classification on microarray data based on adaptive genetic algorithm/k-nearest neighbor method. Expert Syst Appl 38(5):4661–4667CrossRef Lee CP, Lin WS, Chen YM, Kuo B (2011) Gene selection and sample classification on microarray data based on adaptive genetic algorithm/k-nearest neighbor method. Expert Syst Appl 38(5):4661–4667CrossRef
8.
Zurück zum Zitat Wang H, Meghawat A, Morency LP, Xing EP (2016) Select additive learning: improving generalization in multimodal sentiment analysis. arXiv preprint arXiv:1609.05244 Wang H, Meghawat A, Morency LP, Xing EP (2016) Select additive learning: improving generalization in multimodal sentiment analysis. arXiv preprint arXiv:​1609.​05244
9.
Zurück zum Zitat Kumar CA, Sooraj M, Ramakrishnan S (2017) A comparative performance evaluation of supervised feature selection algorithms on microarray datasets. Procedia Comput Sci 115:209–217CrossRef Kumar CA, Sooraj M, Ramakrishnan S (2017) A comparative performance evaluation of supervised feature selection algorithms on microarray datasets. Procedia Comput Sci 115:209–217CrossRef
10.
Zurück zum Zitat Pang H, George SL, Hui K, Tong T (2012) Gene selection using iterative feature elimination random forests for survival outcomes. IEEE/ACM Trans Comput Biol Bioinform (TCBB) 9(5):1422–1431 Pang H, George SL, Hui K, Tong T (2012) Gene selection using iterative feature elimination random forests for survival outcomes. IEEE/ACM Trans Comput Biol Bioinform (TCBB) 9(5):1422–1431
11.
Zurück zum Zitat Kar S, Sharma KD, Maitra M (2015) Gene selection from microarray gene expression data for classification of cancer subgroups employing PSO and adaptive K-nearest neighborhood technique. Expert Syst Appl 42(1):612–627CrossRef Kar S, Sharma KD, Maitra M (2015) Gene selection from microarray gene expression data for classification of cancer subgroups employing PSO and adaptive K-nearest neighborhood technique. Expert Syst Appl 42(1):612–627CrossRef
12.
Zurück zum Zitat McCulloch WS, Pitts W (1943) A logical calculus of the ideas immanent in nervous activity. Bull Math Biophys 5(4):115–133MathSciNetCrossRef McCulloch WS, Pitts W (1943) A logical calculus of the ideas immanent in nervous activity. Bull Math Biophys 5(4):115–133MathSciNetCrossRef
13.
Zurück zum Zitat Bianchini M, Scarselli F (2014) On the complexity of neural network classifiers: a comparison between shallow and deep architectures. IEEE Trans Neural Netw Learn Syst 25(8):1553–1565CrossRef Bianchini M, Scarselli F (2014) On the complexity of neural network classifiers: a comparison between shallow and deep architectures. IEEE Trans Neural Netw Learn Syst 25(8):1553–1565CrossRef
14.
Zurück zum Zitat Vincent P, Larochelle H, Bengio Y, Manzagol PA (2008) Extracting and composing robust features with denoising autoencoders. In: Proceedings of the 25th international conference on Machine learning. ACM, pp 1096–1103 Vincent P, Larochelle H, Bengio Y, Manzagol PA (2008) Extracting and composing robust features with denoising autoencoders. In: Proceedings of the 25th international conference on Machine learning. ACM, pp 1096–1103
15.
Zurück zum Zitat Simard PY, Steinkraus D, Platt JC (2003) Best practices for convolutional neural networks applied to visual document analysis. In: ICDAR Simard PY, Steinkraus D, Platt JC (2003) Best practices for convolutional neural networks applied to visual document analysis. In: ICDAR
16.
Zurück zum Zitat Muja M, Lowe DG (2009) Fast approximate nearest neighbors with automatic algorithm configuration. VISAPP (1) 2(331–340):2 Muja M, Lowe DG (2009) Fast approximate nearest neighbors with automatic algorithm configuration. VISAPP (1) 2(331–340):2
17.
Zurück zum Zitat Krizhevsky A, Sutskever I, Hinton GE (2012) Imagenet classification with deep convolutional neural networks. In: Advances in neural information processing systems Krizhevsky A, Sutskever I, Hinton GE (2012) Imagenet classification with deep convolutional neural networks. In: Advances in neural information processing systems
18.
Zurück zum Zitat Pereira S, Pinto A, Alves V, Silva CA (2016) Brain tumor segmentation using convolutional neural networks in MRI images. IEEE Trans Med Imaging 35(5):1240–1251CrossRef Pereira S, Pinto A, Alves V, Silva CA (2016) Brain tumor segmentation using convolutional neural networks in MRI images. IEEE Trans Med Imaging 35(5):1240–1251CrossRef
19.
Zurück zum Zitat Tivive FHC, Bouzerdoum A (2003) A new class of convolutional neural networks (SICoNNets) and their application of face detection. In: Proceedings of the international joint conference on Neural networks, 2003. IEEE Tivive FHC, Bouzerdoum A (2003) A new class of convolutional neural networks (SICoNNets) and their application of face detection. In: Proceedings of the international joint conference on Neural networks, 2003. IEEE
20.
Zurück zum Zitat Guo Y, Liu Y, Oerlemans A, Lao S, Wu S, Lew MS (2016) Deep learning for visual understanding: a review. Neurocomputing 187:27–48CrossRef Guo Y, Liu Y, Oerlemans A, Lao S, Wu S, Lew MS (2016) Deep learning for visual understanding: a review. Neurocomputing 187:27–48CrossRef
Metadaten
Titel
Microarray Data Classification and Gene Selection Using Convolutional Neural Network
verfasst von
M. Jansi Rani
M. Karuppasamy
K. Poorani
Copyright-Jahr
2024
Verlag
Springer Nature Singapore
DOI
https://doi.org/10.1007/978-981-99-9486-1_18

Neuer Inhalt